PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00025.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 321aa    MW: 35758.2 Da    PI: 9.437
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00025.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.77e-104787545
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                             k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Rsa1.0_00025.1_g00005.1 47 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 87
                             7889************************9877777766555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-83890No hitNo description
SMARTSM003381.8E-643106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384589IPR004827Basic-leucine zipper domain
PfamPF001706.6E-74787IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-74790No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141441.6E-32129201IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMADTSSRTD VSTDGDTDPR DLGSDRGQMM LAAASDSSGS KDKLDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGVFISSS GDQAHSTGGN GALAFDAEHS  120
RWLEEKNRQM NELRSALNAH AGDTELRIIV DGVMTHYEEL FRIKSNAAKN DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KERQVMGLNS LQQTSQQAED ALSQGMESLQ QSLADTLSSG  240
TLGSSSSDNV ASYMGQMAMA MGQLGTLEGF IRQADNLRLQ TLQQMIRVLT TRQSARALLA  300
IHDYTSRLRA LSSLWLARPR E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936100.0AB493610.1 Arabidopsis thaliana At3g12250 mRNA for hypothetical protein, partial cds, clone: RAAt3g12250.
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankAK1754520.0AK175452.1 Arabidopsis thaliana mRNA for bZip transcription factor TGA6 / AtbZip45, complete cds, clone: RAFL21-87-N17.
GenBankAK1768500.0AK176850.1 Arabidopsis thaliana mRNA for bZip transcription factor TGA6 / AtbZip45, complete cds, clone: RAFL25-40-P05.
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731743.10.0PREDICTED: transcription factor TGA6-like isoform X1
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A078IKY70.0A0A078IKY7_BRANA; BnaA01g30760D protein
TrEMBLM4FC890.0M4FC89_BRARP; Uncharacterized protein
STRINGBra038705.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-169TGACG motif-binding factor 6